Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 172_SPNE
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.76%
CheckM Contamination 0.25%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 5
23S Count 5
tRNA Count 20
Contig Count 107
N50 Contigs 51,282 bp
Longest Contig 127,484 bp
Scaffold Count 106
N50 Scaffolds 51,282 bp
Longest Scaffold 127,484 bp
Genome Size 2,122,744 bp
Protein Count 2,135
Coding Density 85.44%
GC Percentage 39.68%
Ambiguous Bases 7
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM107159v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03197363
Country USA: WA
Date 2015-7-10
Genbank Assembly Accession GCA_001071595.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,280
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 1
Species Taxid 1313
SSU Count 5
Submitter University of Washington
Taxid 1313
Total Gap Length 100
Translation Table 11
tRNA Count (total) 66
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JVRJ00000000.1