Streptococcus pseudopneumoniae_H
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pseudopneumoniae_H
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pseudopneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pseudopneumoniae
NCBI Strain Identifiers 163_SPSE
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.82%
CheckM Contamination 0.2%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 17
Contig Count 150
N50 Contigs 28,377 bp
Longest Contig 107,262 bp
Scaffold Count 145
N50 Scaffolds 28,377 bp
Longest Scaffold 107,262 bp
Genome Size 2,123,243 bp
Protein Count 2,115
Coding Density 88.05%
GC Percentage 39.59%
Ambiguous Bases 5
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM107071v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03197355
Country USA: WA
Date 2015-7-10
Genbank Assembly Accession GCA_001070715.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,204
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 5
Species Taxid 257758
SSU Count 1
Submitter University of Washington
Taxid 257758
Total Gap Length 418
Translation Table 11
tRNA Count (total) 30
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JVRR00000000.1