Lacticaseibacillus rhamnosus
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lacticaseibacillus; s__Lacticaseibacillus rhamnosus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus rhamnosus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus rhamnosus
NCBI Strain Identifiers 944_LRHA
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000615245.1)
Genome Characteristics
CheckM Completeness 99.46%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 17
Contig Count 147
N50 Contigs 39,640 bp
Longest Contig 189,765 bp
Scaffold Count 145
N50 Scaffolds 39,640 bp
Longest Scaffold 189,765 bp
Genome Size 2,822,292 bp
Protein Count 2,648
Coding Density 84.99%
GC Percentage 46.75%
Ambiguous Bases 4
GTDB representative GCA_000615245.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM106821v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03198164
Country USA: WA
Date 2015-7-10
Genbank Assembly Accession GCA_001068215.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,789
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 2
Species Taxid 47715
SSU Count 1
Submitter University of Washington
Taxid 47715
Total Gap Length 200
Translation Table 11
tRNA Count (total) 43
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JUMO00000000.1