Lacticaseibacillus rhamnosus
Isolate HQ 16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lacticaseibacillus; s__Lacticaseibacillus rhamnosus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus rhamnosus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus rhamnosus
NCBI Strain Identifiers 906_LRHA
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000615245.1)
Genome Characteristics
CheckM Completeness 98.91%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 100.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 17
Contig Count 192
N50 Contigs 28,880 bp
Longest Contig 121,505 bp
Scaffold Count 192
N50 Scaffolds 28,880 bp
Longest Scaffold 121,505 bp
Genome Size 2,966,367 bp
Protein Count 2,824
Coding Density 85.46%
GC Percentage 46.64%
Ambiguous Bases N/A
GTDB representative GCA_000615245.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM106788v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03198113
Country USA: WA
Date 2015-7-10
Genbank Assembly Accession GCA_001067885.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,963
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 0
Species Taxid 47715
SSU Count 1
Submitter University of Washington
Taxid 47715
Total Gap Length 0
Translation Table 11
tRNA Count (total) 40
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JUON00000000.1