Ligilactobacillus salivarius
Isolate HQ 16S/23S 14 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Ligilactobacillus; s__Ligilactobacillus salivarius
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus salivarius
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus salivarius
NCBI Strain Identifiers 778_LSAL
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001435955.1)
Genome Characteristics
CheckM Completeness 99.48%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 2
23S Count 3
tRNA Count 14
Contig Count 57
N50 Contigs 81,067 bp
Longest Contig 247,021 bp
Scaffold Count 56
N50 Scaffolds 81,067 bp
Longest Scaffold 247,021 bp
Genome Size 1,926,186 bp
Protein Count 1,886
Coding Density 89.26%
GC Percentage 32.68%
Ambiguous Bases N/A
GTDB representative GCA_001435955.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM106726v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03197988
Country USA: WA
Date 2015-7-10
Genbank Assembly Accession GCA_001067265.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 1,855
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 1
Species Taxid 1624
SSU Count 2
Submitter University of Washington
Taxid 1624
Total Gap Length 100
Translation Table 11
tRNA Count (total) 35
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JUTI00000000.1