Lacticaseibacillus rhamnosus
Isolate HQ 16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lacticaseibacillus; s__Lacticaseibacillus rhamnosus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus rhamnosus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus rhamnosus
NCBI Strain Identifiers 708_LRHA
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000615245.1)
Genome Characteristics
CheckM Completeness 99.46%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 17
Contig Count 166
N50 Contigs 36,043 bp
Longest Contig 118,515 bp
Scaffold Count 166
N50 Scaffolds 36,043 bp
Longest Scaffold 118,515 bp
Genome Size 2,960,739 bp
Protein Count 2,856
Coding Density 85.22%
GC Percentage 46.55%
Ambiguous Bases N/A
GTDB representative GCA_000615245.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM106702v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03197912
Country USA: WA
Date 2015-7-10
Genbank Assembly Accession GCA_001067025.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,993
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 0
Species Taxid 47715
SSU Count 1
Submitter University of Washington
Taxid 47715
Total Gap Length 0
Translation Table 11
tRNA Count (total) 41
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JUWG00000000.1