Lacticaseibacillus rhamnosus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lacticaseibacillus; s__Lacticaseibacillus rhamnosus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus rhamnosus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus rhamnosus
NCBI Strain Identifiers 526_LRHA
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000615245.1)
Genome Characteristics
CheckM Completeness 99.46%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 5
23S Count 1
tRNA Count 20
Contig Count 110
N50 Contigs 80,713 bp
Longest Contig 202,018 bp
Scaffold Count 100
N50 Scaffolds 95,979 bp
Longest Scaffold 217,271 bp
Genome Size 3,159,851 bp
Protein Count 3,019
Coding Density 85.21%
GC Percentage 46.63%
Ambiguous Bases 23
GTDB representative GCA_000615245.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM106365v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03197721
Country USA: WA
Date 2015-7-10
Genbank Assembly Accession GCA_001063655.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,146
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 10
Species Taxid 47715
SSU Count 5
Submitter University of Washington
Taxid 47715
Total Gap Length 1000
Translation Table 11
tRNA Count (total) 54
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JVDP00000000.1