Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella boydii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella boydii
NCBI Strain Identifiers 1221_SBOY
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.67%
CheckM Contamination 0.3%
CheckM Strain Heterogeneity 50.0
5S Count 0
16S Count 1
23S Count 2
tRNA Count 14
Contig Count 398
N50 Contigs 29,815 bp
Longest Contig 111,014 bp
Scaffold Count 398
N50 Scaffolds 29,815 bp
Longest Scaffold 111,014 bp
Genome Size 4,845,054 bp
Protein Count 4,748
Coding Density 87.98%
GC Percentage 50.69%
Ambiguous Bases 14
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM106129v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03197186
Country USA: WA
Date 2015-07-10
Genbank Assembly Accession GCA_001061295.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,167
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 0
Species Taxid 621
SSU Count 1
Submitter University of Washington
Taxid 621
Total Gap Length 0
Translation Table 11
tRNA Count (total) 32
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JVYE00000000.1