Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 992_ECOL
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.06%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 3
23S Count 1
tRNA Count 15
Contig Count 407
N50 Contigs 80,549 bp
Longest Contig 379,967 bp
Scaffold Count 404
N50 Scaffolds 80,549 bp
Longest Scaffold 379,967 bp
Genome Size 5,231,905 bp
Protein Count 5,099
Coding Density 87.86%
GC Percentage 50.54%
Ambiguous Bases 18
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM105979v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03198214
Country USA: WA
Date 2015-7-10
Genbank Assembly Accession GCA_001059795.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,520
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 3
Species Taxid 562
SSU Count 3
Submitter University of Washington
Taxid 562
Total Gap Length 300
Translation Table 11
tRNA Count (total) 33
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JUKQ00000000.1