Alloscardovia omnicolens
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Bifidobacteriaceae; g__Alloscardovia; s__Alloscardovia omnicolens
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Alloscardovia; s__Alloscardovia omnicolens
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Alloscardovia; s__Alloscardovia omnicolens
NCBI Strain Identifiers 842_GVAG
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000420505.1)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 65
N50 Contigs 57,150 bp
Longest Contig 138,930 bp
Scaffold Count 64
N50 Scaffolds 57,150 bp
Longest Scaffold 138,930 bp
Genome Size 1,780,067 bp
Protein Count 1,513
Coding Density 86.75%
GC Percentage 46.82%
Ambiguous Bases N/A
GTDB representative GCA_000420505.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM105921v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03198050
Country USA: WA
Date 2015-7-10
Genbank Assembly Accession GCA_001059215.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 1,488
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 1
Species Taxid 419015
SSU Count 1
Submitter University of Washington
Taxid 419015
Total Gap Length 100
Translation Table 11
tRNA Count (total) 44
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JUQY00000000.1