Escherichia coli_D
Isolate HQ 5S/16S/23S 14 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 809_ECOL
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 98.94%
CheckM Contamination 1.02%
CheckM Strain Heterogeneity 46.15
5S Count 1
16S Count 1
23S Count 2
tRNA Count 14
Contig Count 512
N50 Contigs 19,728 bp
Longest Contig 67,855 bp
Scaffold Count 402
N50 Scaffolds 25,596 bp
Longest Scaffold 78,523 bp
Genome Size 5,089,506 bp
Protein Count 4,994
Coding Density 86.71%
GC Percentage 50.54%
Ambiguous Bases 7
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM105855v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03198022
Country USA: WA
Date 2015-7-10
Genbank Assembly Accession GCA_001058555.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,426
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 110
Species Taxid 562
SSU Count 1
Submitter University of Washington
Taxid 562
Total Gap Length 10827
Translation Table 11
tRNA Count (total) 32
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JUSA00000000.1