Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 502_ECOL
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 4
23S Count 6
tRNA Count 20
Contig Count 166
N50 Contigs 116,630 bp
Longest Contig 288,541 bp
Scaffold Count 164
N50 Scaffolds 116,630 bp
Longest Scaffold 288,541 bp
Genome Size 5,047,118 bp
Protein Count 4,702
Coding Density 87.91%
GC Percentage 50.51%
Ambiguous Bases 31
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM105706v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03197695
Country USA: WA
Date 2015-7-10
Genbank Assembly Accession GCA_001057065.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,075
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 2
Species Taxid 562
SSU Count 4
Submitter University of Washington
Taxid 562
Total Gap Length 117
Translation Table 11
tRNA Count (total) 50
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JVEP00000000.1