Alloscardovia omnicolens
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Bifidobacteriaceae; g__Alloscardovia; s__Alloscardovia omnicolens
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Alloscardovia; s__Alloscardovia omnicolens
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Alloscardovia; s__Alloscardovia omnicolens
NCBI Strain Identifiers 476_GVAG
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000420505.1)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 5
23S Count 5
tRNA Count 20
Contig Count 26
N50 Contigs 104,932 bp
Longest Contig 192,369 bp
Scaffold Count 25
N50 Scaffolds 127,193 bp
Longest Scaffold 232,719 bp
Genome Size 1,759,239 bp
Protein Count 1,470
Coding Density 85.85%
GC Percentage 46.89%
Ambiguous Bases 1
GTDB representative GCA_000420505.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM105690v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03197668
Country USA: WA
Date 2015-7-10
Genbank Assembly Accession GCA_001056905.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 1,442
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 1
Species Taxid 419015
SSU Count 5
Submitter University of Washington
Taxid 419015
Total Gap Length 100
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JVFQ00000000.1