Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 456_ECOL
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 1.25%
CheckM Strain Heterogeneity 43.75
5S Count 4
16S Count 3
23S Count 5
tRNA Count 18
Contig Count 197
N50 Contigs 109,127 bp
Longest Contig 285,881 bp
Scaffold Count 176
N50 Scaffolds 109,982 bp
Longest Scaffold 285,881 bp
Genome Size 5,135,032 bp
Protein Count 4,894
Coding Density 88.16%
GC Percentage 50.63%
Ambiguous Bases 118
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM105687v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03197648
Country USA: WA
Date 2015-07-10
Genbank Assembly Accession GCA_001056875.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,332
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 21
Species Taxid 562
SSU Count 3
Submitter University of Washington
Taxid 562
Total Gap Length 1932
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JVGK00000000.1