Oligella urethralis
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Oligella; s__Oligella urethralis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Oligella; s__Oligella urethralis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Oligella; s__Oligella urethralis
NCBI Strain Identifiers 303_AMIM
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000372065.1)
Genome Characteristics
CheckM Completeness 99.36%
CheckM Contamination 0.96%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 5
23S Count 5
tRNA Count 19
Contig Count 156
N50 Contigs 73,249 bp
Longest Contig 209,528 bp
Scaffold Count 140
N50 Scaffolds 73,249 bp
Longest Scaffold 210,092 bp
Genome Size 2,511,525 bp
Protein Count 2,365
Coding Density 88.77%
GC Percentage 46.16%
Ambiguous Bases 19
GTDB representative GCA_000372065.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM105628v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03197495
Country USA: WA
Date 2015-7-10
Genbank Assembly Accession GCA_001056285.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,350
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 16
Species Taxid 90245
SSU Count 5
Submitter University of Washington
Taxid 90245
Total Gap Length 1060
Translation Table 11
tRNA Count (total) 44
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JVMH00000000.1