Bacteroides thetaiotaomicron
Isolate HQ 5S/16S/23S 14 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides thetaiotaomicron
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides thetaiotaomicron
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides thetaiotaomicron
NCBI Strain Identifiers 19_BTHE
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000011065.1)
Genome Characteristics
CheckM Completeness 99.09%
CheckM Contamination 0.59%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 14
Contig Count 354
N50 Contigs 42,751 bp
Longest Contig 209,587 bp
Scaffold Count 351
N50 Scaffolds 42,751 bp
Longest Scaffold 209,587 bp
Genome Size 6,359,255 bp
Protein Count 5,132
Coding Density 90.17%
GC Percentage 42.99%
Ambiguous Bases 11
GTDB representative GCA_000011065.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM105575v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03197381
Country USA: WA
Date 2015-7-10
Genbank Assembly Accession GCA_001055755.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,060
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 3
Species Taxid 818
SSU Count 1
Submitter University of Washington
Taxid 818
Total Gap Length 213
Translation Table 11
tRNA Count (total) 27
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JVQR00000000.1