Salmonella enterica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Newport; x__Salmonella enterica subsp. enterica serovar Newport str. Pond080-2TTA
NCBI Strain Identifiers Pond080-2TTA
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.48%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 2
tRNA Count 19
Contig Count 266
N50 Contigs 39,460 bp
Longest Contig 168,484 bp
Scaffold Count 266
N50 Scaffolds 39,460 bp
Longest Scaffold 168,484 bp
Genome Size 4,830,862 bp
Protein Count 4,765
Coding Density 87.71%
GC Percentage 52.05%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name CFSAN000928_1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01816135
Country USA:VA
Date 2015-7-9
Genbank Assembly Accession GCA_001051775.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source pond sediment
Latitude Longitude None
Molecule Count N/A
CDS Count 5,013
Refseq Category na
Seq Rel Date 2015/07/09
Spanned Gaps 0
Species Taxid 28901
SSU Count 1
Submitter FDA
Taxid 984251
Total Gap Length 0
Translation Table 11
tRNA Count (total) 64
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master APHD00000000.1