Helicobacter pylori_C
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori_C
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
NCBI Strain Identifiers UM520
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000277405.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.61%
CheckM Strain Heterogeneity 87.5
5S Count 0
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 51
N50 Contigs 52,801 bp
Longest Contig 177,886 bp
Scaffold Count 51
N50 Scaffolds 52,801 bp
Longest Scaffold 177,886 bp
Genome Size 1,617,768 bp
Protein Count 1,591
Coding Density 91.35%
GC Percentage 38.68%
Ambiguous Bases 163
GTDB representative GCA_000277405.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM105144v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03770843
Country Malaysia
Date 2015-7-9
Genbank Assembly Accession GCA_001051445.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Gastric Biopsy
Latitude Longitude None
Molecule Count N/A
CDS Count 1,607
Refseq Category na
Seq Rel Date 2015/07/09
Spanned Gaps 0
Species Taxid 210
SSU Count 2
Submitter University of Malaya-University of Western Australia
Taxid 210
Total Gap Length 0
Translation Table 11
tRNA Count (total) 37
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LEOV00000000.1