Vibrio nigripulchritudo
Isolate HQ 16S/23S 7 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio nigripulchritudo
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio nigripulchritudo
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio nigripulchritudo; x__Vibrio nigripulchritudo Pon4
NCBI Strain Identifiers Pon4
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000222685.2)
Genome Characteristics
CheckM Completeness 99.18%
CheckM Contamination 2.79%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 7
Contig Count 149
N50 Contigs 72,183 bp
Longest Contig 241,977 bp
Scaffold Count 149
N50 Scaffolds 72,183 bp
Longest Scaffold 241,977 bp
Genome Size 6,059,397 bp
Protein Count 5,479
Coding Density 88.81%
GC Percentage 45.79%
Ambiguous Bases N/A
GTDB representative GCA_000222685.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM105067v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3146332
Country None
Date 2013-10-2
Genbank Assembly Accession GCA_001050675.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,446
Refseq Category na
Seq Rel Date 2013/10/02
Spanned Gaps 0
Species Taxid 28173
SSU Count 1
Submitter Genoscope CEA
Taxid 1238445
Total Gap Length 0
Translation Table 11
tRNA Count (total) 12
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CAOA00000000.1