Listeria_A newyorkensis
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Listeriaceae; g__Listeria_A; s__Listeria_A newyorkensis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Listeriaceae; g__Listeria; s__Listeria newyorkensis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Listeriaceae; g__Listeria; s__Listeria newyorkensis
NCBI Strain Identifiers 1903
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000766145.1)
Genome Characteristics
CheckM Completeness 96.69%
CheckM Contamination 1.66%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 2
tRNA Count 18
Contig Count 143
N50 Contigs 48,265 bp
Longest Contig 163,474 bp
Scaffold Count 79
N50 Scaffolds 108,251 bp
Longest Scaffold 278,573 bp
Genome Size 3,453,086 bp
Protein Count 3,305
Coding Density 87.17%
GC Percentage 43.03%
Ambiguous Bases N/A
GTDB representative GCA_000766145.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM105030v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02418979
Country Italy
Date 2015-7-10
Genbank Assembly Accession GCA_001050305.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source milk
Latitude Longitude 40.178873 N 17.753906 E
Molecule Count N/A
CDS Count 3,259
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 64
Species Taxid 1497681
SSU Count 1
Submitter University of Milan
Taxid 1497681
Total Gap Length 35563
Translation Table 11
tRNA Count (total) 37
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AZHN00000000.1