GTDB Taxonomy | d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio crassostreae |
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Filtered NCBI Taxonomy | d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio crassostreae |
Unfiltered NCBI Taxonomy | d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio crassostreae |
NCBI Strain Identifiers | LGP7 |
GTDB Type Material Designation | type strain of species |
GTDB Representative of Species | True (79 genomes in species cluster) |
CheckM Completeness | 99.87% |
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CheckM Contamination | 0.59% |
CheckM Strain Heterogeneity | 25.0 |
5S Count | 0 |
16S Count | 2 |
23S Count | 2 |
tRNA Count | 18 |
Contig Count | 122 |
N50 Contigs | 270,473 bp |
Longest Contig | 665,314 bp |
Scaffold Count | 122 |
N50 Scaffolds | 270,473 bp |
Longest Scaffold | 665,314 bp |
Genome Size | 5,630,363 bp |
Protein Count | 5,042 |
Coding Density | 85.68% |
GC Percentage | 44.24% |
Ambiguous Bases | 2 |
GTDB representative of species | True |
Assembly Level | Contig |
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Assembly Name | VLGP7_PRJEB5883 |
Assembly Type | n/a |
Bioproject | PRJNA224116 |
Biosample | SAMEA2591296 |
Country | None |
Date | 2015-6-30 |
Genbank Assembly Accession | GCA_001048535.1 |
Genome Category | Isolate |
Genome Representation | full |
Isolate | None |
Isolation Source | None |
Latitude Longitude | None |
Molecule Count | N/A |
CDS Count | 5,014 |
Refseq Category | na |
Seq Rel Date | 2015/06/30 |
Spanned Gaps | 0 |
Species Taxid | 246167 |
SSU Count | 2 |
Submitter | STATION BIOLOGIQUE DE ROSCOFF |
Taxid | 246167 |
Total Gap Length | 0 |
Translation Table | 11 |
tRNA Count (total) | 78 |
Type Material | assembly from type material |
Unspanned Gaps | 0 |
Version Status | latest |
WGS Master | CCJW00000000.1 |