Vibrio crassostreae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio crassostreae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio crassostreae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio crassostreae
NCBI Strain Identifiers J5-19
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001048535.1)
Genome Characteristics
CheckM Completeness 99.85%
CheckM Contamination 0.69%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 18
Contig Count 145
N50 Contigs 194,571 bp
Longest Contig 699,675 bp
Scaffold Count 145
N50 Scaffolds 194,571 bp
Longest Scaffold 699,675 bp
Genome Size 5,597,818 bp
Protein Count 4,973
Coding Density 85.64%
GC Percentage 44.21%
Ambiguous Bases 2
GTDB representative GCA_001048535.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name VRSK38_PRJEB5880
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2591294
Country None
Date 2015-6-30
Genbank Assembly Accession GCA_001048495.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,944
Refseq Category na
Seq Rel Date 2015/06/30
Spanned Gaps 0
Species Taxid 246167
SSU Count 1
Submitter STATION BIOLOGIQUE DE ROSCOFF
Taxid 246167
Total Gap Length 0
Translation Table 11
tRNA Count (total) 78
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CCJU00000000.1