Novosphingobium barchaimii
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Novosphingobium; s__Novosphingobium barchaimii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Novosphingobium; s__Novosphingobium barchaimii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Novosphingobium; s__Novosphingobium barchaimii; x__Novosphingobium barchaimii LL02
NCBI Strain Identifiers LL02
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.82%
CheckM Contamination 2.13%
CheckM Strain Heterogeneity 12.5
5S Count 6
16S Count 4
23S Count 6
tRNA Count 20
Contig Count 25
N50 Contigs 797,132 bp
Longest Contig 1,356,352 bp
Scaffold Count 19
N50 Scaffolds 797,132 bp
Longest Scaffold 1,413,041 bp
Genome Size 5,313,474 bp
Protein Count 4,989
Coding Density 88.54%
GC Percentage 64.02%
Ambiguous Bases 61
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name N.barLL02
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02727999
Country Czech Republic
Date 2015-7-7
Genbank Assembly Accession GCA_001046635.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source hexachlorocyclohexane-contaminated soil
Latitude Longitude None
Molecule Count N/A
CDS Count 4,953
Refseq Category representative genome
Seq Rel Date 2015/07/07
Spanned Gaps 7
Species Taxid 1420591
SSU Count 4
Submitter CSIRO
Taxid 1114963
Total Gap Length 6126
Translation Table 11
tRNA Count (total) 57
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JACU00000000.1