Staphylococcus aureus
Isolate HQ 16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
NCBI Strain Identifiers PE009
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001027105.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 3.89%
CheckM Strain Heterogeneity 36.84
5S Count 0
16S Count 6
23S Count 6
tRNA Count 19
Contig Count 683
N50 Contigs 189,633 bp
Longest Contig 577,249 bp
Scaffold Count 683
N50 Scaffolds 189,633 bp
Longest Scaffold 577,249 bp
Genome Size 2,947,335 bp
Protein Count 3,099
Coding Density 82.06%
GC Percentage 32.78%
Ambiguous Bases N/A
GTDB representative GCA_001027105.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM104633v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02795946
Country USA: New York
Date 2015-7-2
Genbank Assembly Accession GCA_001046335.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Umbilicus
Latitude Longitude 40.7127 N 74.0059 W
Molecule Count N/A
CDS Count 3,342
Refseq Category na
Seq Rel Date 2015/07/02
Spanned Gaps 0
Species Taxid 1280
SSU Count 9
Submitter South American MRSA Consortium
Taxid 1280
Total Gap Length 0
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LAMO00000000.1