Staphylococcus aureus
Isolate HQ 16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
NCBI Strain Identifiers HUV03
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001027105.1)
Genome Characteristics
CheckM Completeness 99.32%
CheckM Contamination 0.99%
CheckM Strain Heterogeneity 57.14
5S Count 0
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 415
N50 Contigs 22,686 bp
Longest Contig 67,577 bp
Scaffold Count 415
N50 Scaffolds 22,686 bp
Longest Scaffold 67,577 bp
Genome Size 2,870,365 bp
Protein Count 2,860
Coding Density 83.79%
GC Percentage 32.76%
Ambiguous Bases N/A
GTDB representative GCA_001027105.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM104577v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02780904
Country Colombia: Cali
Date 2015-7-2
Genbank Assembly Accession GCA_001045775.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source subgaleal pus
Latitude Longitude 3.4206 N 76.5222 W
Molecule Count N/A
CDS Count 3,144
Refseq Category na
Seq Rel Date 2015/07/02
Spanned Gaps 0
Species Taxid 1280
SSU Count 1
Submitter South American MRSA Consortium
Taxid 1280
Total Gap Length 0
Translation Table 11
tRNA Count (total) 50
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LALS00000000.1