Staphylococcus aureus
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus; sb__Staphylococcus aureus subsp. aureus
NCBI Strain Identifiers #32S
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001027105.1)
Genome Characteristics
CheckM Completeness 99.37%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 148
N50 Contigs 76,042 bp
Longest Contig 198,407 bp
Scaffold Count 118
N50 Scaffolds 93,174 bp
Longest Scaffold 198,407 bp
Genome Size 2,943,897 bp
Protein Count 2,830
Coding Density 84.15%
GC Percentage 32.74%
Ambiguous Bases 7
GTDB representative GCA_001027105.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM104561v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03161113
Country Pakistan: Rawalpindi
Date 2015-12-8
Genbank Assembly Accession GCA_001045615.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source perirectal
Latitude Longitude None
Molecule Count N/A
CDS Count 3,100
Refseq Category na
Seq Rel Date 2015/12/08
Spanned Gaps 30
Species Taxid 1280
SSU Count 1
Submitter FDA
Taxid 46170
Total Gap Length 1861
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JTJX00000000.2