Lacticaseibacillus rhamnosus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lacticaseibacillus; s__Lacticaseibacillus rhamnosus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus rhamnosus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus rhamnosus
NCBI Strain Identifiers 40f
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000615245.1)
Genome Characteristics
CheckM Completeness 98.86%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 81
N50 Contigs 106,608 bp
Longest Contig 269,181 bp
Scaffold Count 81
N50 Scaffolds 106,608 bp
Longest Scaffold 269,181 bp
Genome Size 3,127,473 bp
Protein Count 3,112
Coding Density 85.39%
GC Percentage 46.61%
Ambiguous Bases N/A
GTDB representative GCA_000615245.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM104440v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03766173
Country Russia: central region
Date 2015-07-01
Genbank Assembly Accession GCA_001044405.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source feces
Latitude Longitude None
Molecule Count N/A
CDS Count 3,157
Refseq Category na
Seq Rel Date 2015/07/01
Spanned Gaps 0
Species Taxid 47715
SSU Count 2
Submitter Vavilov Institute of General Genetics
Taxid 47715
Total Gap Length 0
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LFNA00000000.1