Mycobacterium obuense
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium obuense
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycolicibacterium; s__Mycolicibacterium obuense
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycolicibacterium; s__Mycolicibacterium obuense
NCBI Strain Identifiers DSM 44075
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (5 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.44%
CheckM Contamination 0.24%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 58
N50 Contigs 215,061 bp
Longest Contig 800,070 bp
Scaffold Count 58
N50 Scaffolds 215,061 bp
Longest Scaffold 800,070 bp
Genome Size 5,710,643 bp
Protein Count 5,474
Coding Density 93.31%
GC Percentage 67.96%
Ambiguous Bases 116
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM104424v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02952053
Country None
Date 2015-07-01
Genbank Assembly Accession GCA_001044245.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,440
Refseq Category representative genome
Seq Rel Date 2015/07/01
Spanned Gaps 0
Species Taxid 1807
SSU Count 1
Submitter Uppsala University
Taxid 1807
Total Gap Length 0
Translation Table 11
tRNA Count (total) 47
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JYNU00000000.1