Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis variant bovis; x__Mycobacterium tuberculosis variant bovis BCG
NCBI Strain Identifiers 3281
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.78%
CheckM Contamination 3.0%
CheckM Strain Heterogeneity 100.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 1
N50 Contigs 4,410,431 bp
Longest Contig 4,410,431 bp
Scaffold Count 1
N50 Scaffolds 4,410,431 bp
Longest Scaffold 4,410,431 bp
Genome Size 4,410,431 bp
Protein Count 4,062
Coding Density 90.31%
GC Percentage 65.65%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM104325v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02864173
Country China
Date 2015-06-30
Genbank Assembly Accession GCA_001043255.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source human
Latitude Longitude None
Molecule Count 1
CDS Count 4,217
Refseq Category na
Seq Rel Date 2015/06/30
Spanned Gaps 0
Species Taxid 1773
SSU Count 1
Submitter Huazhong Agriculture University, Life Science and technology academy
Taxid 33892
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None