Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Cerro
NCBI Strain Identifiers 87
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 2
tRNA Count 15
Contig Count 82
N50 Contigs 98,224 bp
Longest Contig 279,657 bp
Scaffold Count 44
N50 Scaffolds 170,734 bp
Longest Scaffold 352,826 bp
Genome Size 4,515,605 bp
Protein Count 4,217
Coding Density 87.57%
GC Percentage 52.27%
Ambiguous Bases 14
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM104309v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03256207
Country Japan
Date 2015-6-30
Genbank Assembly Accession GCA_001043095.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source commercial egg-producing farm
Latitude Longitude None
Molecule Count N/A
CDS Count 4,493
Refseq Category na
Seq Rel Date 2015/06/30
Spanned Gaps 38
Species Taxid 28901
SSU Count 1
Submitter Shanghai Jiao Tong University
Taxid 340188
Total Gap Length 3840
Translation Table 11
tRNA Count (total) 40
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LELI00000000.1