Pseudomonas_E deceptionensis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E deceptionensis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas deceptionensis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas deceptionensis
NCBI Strain Identifiers DSM 26521
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_900106095.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 15
N50 Contigs 755,170 bp
Longest Contig 1,862,075 bp
Scaffold Count 15
N50 Scaffolds 755,170 bp
Longest Scaffold 1,862,075 bp
Genome Size 5,052,933 bp
Protein Count 4,610
Coding Density 89.12%
GC Percentage 58.56%
Ambiguous Bases N/A
GTDB representative GCA_900106095.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name G8684
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03328792
Country Antarctica: South Shetland Islands; Deception Island
Date 2015-6-30
Genbank Assembly Accession GCA_001042895.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source marine sediment
Latitude Longitude None
Molecule Count N/A
CDS Count 4,617
Refseq Category na
Seq Rel Date 2015/06/30
Spanned Gaps 0
Species Taxid 882211
SSU Count 2
Submitter Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM
Taxid 882211
Total Gap Length 0
Translation Table 11
tRNA Count (total) 64
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JYKX00000000.1