Xanthomonas oryzae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas oryzae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas oryzae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas oryzae; x__Xanthomonas oryzae pv. oryzicola
NCBI Strain Identifiers BXOR1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_004136375.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.36%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 1
N50 Contigs 4,692,590 bp
Longest Contig 4,692,590 bp
Scaffold Count 1
N50 Scaffolds 4,692,590 bp
Longest Scaffold 4,692,590 bp
Genome Size 4,692,590 bp
Protein Count 4,189
Coding Density 85.48%
GC Percentage 64.14%
Ambiguous Bases N/A
GTDB representative GCA_004136375.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM104279v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03612259
Country India
Date 2015-6-30
Genbank Assembly Accession GCA_001042795.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 4,147
Refseq Category na
Seq Rel Date 2015/06/30
Spanned Gaps 0
Species Taxid 347
SSU Count 2
Submitter Bogdanove Lab, Plant Pathology and Plant-Microbe Biology, Cornell University
Taxid 129394
Total Gap Length 0
Translation Table 11
tRNA Count (total) 54
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None