Xenorhabdus khoisanae
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Xenorhabdus; s__Xenorhabdus khoisanae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Morganellaceae; g__Xenorhabdus; s__Xenorhabdus khoisanae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Morganellaceae; g__Xenorhabdus; s__Xenorhabdus khoisanae
NCBI Strain Identifiers MCB
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 1
23S Count 3
tRNA Count 19
Contig Count 266
N50 Contigs 38,931 bp
Longest Contig 133,131 bp
Scaffold Count 266
N50 Scaffolds 38,931 bp
Longest Scaffold 133,131 bp
Genome Size 4,658,186 bp
Protein Count 4,156
Coding Density 85.18%
GC Percentage 43.60%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM103746v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03743593
Country South Africa: Gauteng
Date 2015-6-22
Genbank Assembly Accession GCA_001037465.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source grassland soil
Latitude Longitude 26.30 S 28.21 E
Molecule Count N/A
CDS Count 4,143
Refseq Category na
Seq Rel Date 2015/06/22
Spanned Gaps 0
Species Taxid 880157
SSU Count 3
Submitter University of Witwatersrand
Taxid 880157
Total Gap Length 0
Translation Table 11
tRNA Count (total) 65
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LFCV00000000.1