Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers Pae_CF67.11t
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.5%
CheckM Contamination 0.45%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 109
N50 Contigs 223,858 bp
Longest Contig 725,198 bp
Scaffold Count 85
N50 Scaffolds 249,589 bp
Longest Scaffold 725,198 bp
Genome Size 6,405,143 bp
Protein Count 5,951
Coding Density 89.64%
GC Percentage 66.43%
Ambiguous Bases 6
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM103648v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03566443
Country Canada: Toronto
Date 2015-6-22
Genbank Assembly Accession GCA_001036485.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude 43.653650 N 79.377806 W
Molecule Count N/A
CDS Count 6,073
Refseq Category na
Seq Rel Date 2015/06/22
Spanned Gaps 24
Species Taxid 287
SSU Count 1
Submitter University of Toronto
Taxid 287
Total Gap Length 1591
Translation Table 11
tRNA Count (total) 55
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LEJN00000000.1