Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers Pae_CF67.09r
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 98.44%
CheckM Contamination 0.45%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 3
23S Count 3
tRNA Count 18
Contig Count 276
N50 Contigs 80,003 bp
Longest Contig 349,750 bp
Scaffold Count 238
N50 Scaffolds 90,811 bp
Longest Scaffold 349,985 bp
Genome Size 6,400,452 bp
Protein Count 6,059
Coding Density 89.49%
GC Percentage 66.40%
Ambiguous Bases 100
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM103562v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03566402
Country Canada: Toronto
Date 2015-6-22
Genbank Assembly Accession GCA_001035625.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude 43.653650 N 79.377806 W
Molecule Count N/A
CDS Count 6,169
Refseq Category na
Seq Rel Date 2015/06/22
Spanned Gaps 38
Species Taxid 287
SSU Count 3
Submitter University of Toronto
Taxid 287
Total Gap Length 2096
Translation Table 11
tRNA Count (total) 53
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LEHW00000000.1