Pseudomonas aeruginosa
Isolate HQ 16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers Pae_CF67.08f
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 98.53%
CheckM Contamination 0.45%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 17
Contig Count 375
N50 Contigs 40,139 bp
Longest Contig 132,084 bp
Scaffold Count 161
N50 Scaffolds 90,610 bp
Longest Scaffold 255,238 bp
Genome Size 6,386,431 bp
Protein Count 6,022
Coding Density 88.80%
GC Percentage 66.42%
Ambiguous Bases 826
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM103498v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03566370
Country Canada: Toronto
Date 2015-6-22
Genbank Assembly Accession GCA_001034985.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude 43.653650 N 79.377806 W
Molecule Count N/A
CDS Count 6,124
Refseq Category na
Seq Rel Date 2015/06/22
Spanned Gaps 214
Species Taxid 287
SSU Count 1
Submitter University of Toronto
Taxid 287
Total Gap Length 11068
Translation Table 11
tRNA Count (total) 43
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LEGQ00000000.1