Pseudomonas aeruginosa
Isolate HQ 16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers Pae_CF67.06j
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 97.84%
CheckM Contamination 0.45%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 520
N50 Contigs 32,937 bp
Longest Contig 138,471 bp
Scaffold Count 180
N50 Scaffolds 86,774 bp
Longest Scaffold 318,025 bp
Genome Size 6,387,357 bp
Protein Count 6,046
Coding Density 88.54%
GC Percentage 66.42%
Ambiguous Bases 474
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM103468v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03566335
Country Canada: Toronto
Date 2015-6-22
Genbank Assembly Accession GCA_001034685.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude 43.653650 N 79.377806 W
Molecule Count N/A
CDS Count 6,153
Refseq Category na
Seq Rel Date 2015/06/22
Spanned Gaps 340
Species Taxid 287
SSU Count 1
Submitter University of Toronto
Taxid 287
Total Gap Length 15929
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LEFH00000000.1