Limosilactobacillus panis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Limosilactobacillus; s__Limosilactobacillus panis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus panis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus panis; x__Lactobacillus panis DSM 6035
NCBI Strain Identifiers DSM 6035
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_001435935.1)
Genome Characteristics
CheckM Completeness 99.46%
CheckM Contamination 2.28%
CheckM Strain Heterogeneity 16.67
5S Count 4
16S Count 8
23S Count 15
tRNA Count 20
Contig Count 219
N50 Contigs 23,957 bp
Longest Contig 136,030 bp
Scaffold Count 219
N50 Scaffolds 23,957 bp
Longest Scaffold 136,030 bp
Genome Size 2,082,789 bp
Protein Count 2,152
Coding Density 86.54%
GC Percentage 47.87%
Ambiguous Bases N/A
GTDB representative GCA_001435935.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM102798v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03658566
Country Germany
Date 2015-6-15
Genbank Assembly Accession GCA_001027985.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sourdough
Latitude Longitude None
Molecule Count N/A
CDS Count 2,058
Refseq Category na
Seq Rel Date 2015/06/15
Spanned Gaps 0
Species Taxid 47493
SSU Count 11
Submitter The First Affiliated Hospital, College of Medicine, Zhejiang University
Taxid 1423782
Total Gap Length 0
Translation Table 11
tRNA Count (total) 60
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master LDPB00000000.1