Pasteurella multocida
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida; sb__Pasteurella multocida subsp. multocida
NCBI Strain Identifiers TX1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000754275.1)
Genome Characteristics
CheckM Completeness 99.55%
CheckM Contamination 0.28%
CheckM Strain Heterogeneity 50.0
5S Count 2
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 35
N50 Contigs 289,440 bp
Longest Contig 635,052 bp
Scaffold Count 35
N50 Scaffolds 289,440 bp
Longest Scaffold 635,052 bp
Genome Size 2,409,984 bp
Protein Count 2,253
Coding Density 89.60%
GC Percentage 40.34%
Ambiguous Bases N/A
GTDB representative GCA_000754275.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM102769v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02721556
Country Pakistan: Punjab; Rawalpindi
Date 2015-06-14
Genbank Assembly Accession GCA_001027695.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source diseased buffalo with haemorrhagic septicaemia
Latitude Longitude 33.75 N 72.79 E
Molecule Count N/A
CDS Count 2,249
Refseq Category na
Seq Rel Date 2015/06/14
Spanned Gaps 0
Species Taxid 747
SSU Count 1
Submitter Murdoch University
Taxid 44283
Total Gap Length 0
Translation Table 11
tRNA Count (total) 50
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JQAH00000000.1