Bifidobacterium bifidum
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium bifidum
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium bifidum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium bifidum; x__Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456
NCBI Strain Identifiers JCM 1255
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (74 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.54%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 1
N50 Contigs 2,211,039 bp
Longest Contig 2,211,039 bp
Scaffold Count 1
N50 Scaffolds 2,211,039 bp
Longest Scaffold 2,211,039 bp
Genome Size 2,211,039 bp
Protein Count 1,827
Coding Density 85.75%
GC Percentage 62.66%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM102513v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00061040
Country None
Date 2015-3-24
Genbank Assembly Accession GCA_001025135.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 1,822
Refseq Category na
Seq Rel Date 2015/03/24
Spanned Gaps 0
Species Taxid 1681
SSU Count 2
Submitter Graduate School of Frontier Sciences, University of Tokyo
Taxid 500634
Total Gap Length 0
Translation Table 11
tRNA Count (total) 54
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None