Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers Pae_CF67.05f
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.41%
CheckM Contamination 0.53%
CheckM Strain Heterogeneity 25.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 190
N50 Contigs 122,428 bp
Longest Contig 478,009 bp
Scaffold Count 172
N50 Scaffolds 135,601 bp
Longest Scaffold 569,942 bp
Genome Size 6,401,137 bp
Protein Count 5,999
Coding Density 89.66%
GC Percentage 66.43%
Ambiguous Bases 39
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM102480v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03566311
Country Canada: Toronto
Date 2015-6-10
Genbank Assembly Accession GCA_001024805.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude 43.653650 N 79.377806 W
Molecule Count N/A
CDS Count 6,112
Refseq Category na
Seq Rel Date 2015/06/10
Spanned Gaps 18
Species Taxid 287
SSU Count 1
Submitter University of Toronto
Taxid 287
Total Gap Length 1075
Translation Table 11
tRNA Count (total) 49
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LDMO00000000.1