Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers Pae_CF67.04o
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.17%
CheckM Contamination 0.45%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 154
N50 Contigs 126,607 bp
Longest Contig 570,158 bp
Scaffold Count 134
N50 Scaffolds 138,463 bp
Longest Scaffold 570,158 bp
Genome Size 6,400,360 bp
Protein Count 5,976
Coding Density 89.63%
GC Percentage 66.43%
Ambiguous Bases 40
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM102464v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03566300
Country Canada: Toronto
Date 2015-6-10
Genbank Assembly Accession GCA_001024645.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude 43.653650 N 79.377806 W
Molecule Count N/A
CDS Count 6,098
Refseq Category na
Seq Rel Date 2015/06/10
Spanned Gaps 20
Species Taxid 287
SSU Count 1
Submitter University of Toronto
Taxid 287
Total Gap Length 1406
Translation Table 11
tRNA Count (total) 55
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LDMD00000000.1