Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers Pae_CF67.02j
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.2%
CheckM Contamination 0.6%
CheckM Strain Heterogeneity 20.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 285
N50 Contigs 109,391 bp
Longest Contig 554,377 bp
Scaffold Count 249
N50 Scaffolds 120,385 bp
Longest Scaffold 554,377 bp
Genome Size 6,390,527 bp
Protein Count 6,068
Coding Density 89.50%
GC Percentage 66.42%
Ambiguous Bases 72
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM102439v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03566257
Country Canada: Toronto
Date 2015-6-10
Genbank Assembly Accession GCA_001024395.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude 43.653650 N 79.377806 W
Molecule Count N/A
CDS Count 6,173
Refseq Category na
Seq Rel Date 2015/06/10
Spanned Gaps 36
Species Taxid 287
SSU Count 1
Submitter University of Toronto
Taxid 287
Total Gap Length 2215
Translation Table 11
tRNA Count (total) 51
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LDKM00000000.1