Pseudomonas_E chlororaphis_E
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E chlororaphis_E
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas chlororaphis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas chlororaphis group; s__Pseudomonas chlororaphis
NCBI Strain Identifiers UFB2
GTDB Type Material Designation not type material
GTDB Representative of Species True (4 genomes in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.6%
CheckM Strain Heterogeneity 16.67
5S Count 6
16S Count 5
23S Count 6
tRNA Count 20
Contig Count 1
N50 Contigs 6,360,256 bp
Longest Contig 6,360,256 bp
Scaffold Count 1
N50 Scaffolds 6,360,256 bp
Longest Scaffold 6,360,256 bp
Genome Size 6,360,256 bp
Protein Count 5,522
Coding Density 88.12%
GC Percentage 62.03%
Ambiguous Bases 9
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM102353v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03395035
Country USA:Mississippi
Date 2015-6-9
Genbank Assembly Accession GCA_001023535.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Soil
Latitude Longitude 33.2 N 90.5 W
Molecule Count 1
CDS Count 5,565
Refseq Category na
Seq Rel Date 2015/06/09
Spanned Gaps 0
Species Taxid 587753
SSU Count 5
Submitter Mississippi state university
Taxid 587753
Total Gap Length 0
Translation Table 11
tRNA Count (total) 65
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None