Citrobacter freundii
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; s__Citrobacter freundii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; s__Citrobacter freundii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; x__Citrobacter freundii complex; s__Citrobacter freundii
NCBI Strain Identifiers CAV1321
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900635425.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.39%
CheckM Strain Heterogeneity 0.0
5S Count 8
16S Count 8
23S Count 8
tRNA Count 20
Contig Count 10
N50 Contigs 4,976,908 bp
Longest Contig 4,976,908 bp
Scaffold Count 10
N50 Scaffolds 4,976,908 bp
Longest Scaffold 4,976,908 bp
Genome Size 5,489,397 bp
Protein Count 5,252
Coding Density 87.76%
GC Percentage 51.59%
Ambiguous Bases N/A
GTDB representative GCA_900635425.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM102215v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03733741
Country USA:Virginia
Date 2015-6-9
Genbank Assembly Accession GCA_001022155.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Urine/Genitourinary
Latitude Longitude 38.14 N 78.45 W
Molecule Count 10
CDS Count 5,441
Refseq Category na
Seq Rel Date 2015/06/09
Spanned Gaps 0
Species Taxid 546
SSU Count 8
Submitter University of Oxford
Taxid 546
Total Gap Length 0
Translation Table 11
tRNA Count (total) 85
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None