Pseudomonas_E fluorescens_N
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E fluorescens_N
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas fluorescens
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas fluorescens group; s__Pseudomonas fluorescens
NCBI Strain Identifiers AU11114
GTDB Type Material Designation not type material
GTDB Representative of Species True
Genome Characteristics
CheckM Completeness 99.66%
CheckM Contamination 0.48%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 5
23S Count 3
tRNA Count 19
Contig Count 64
N50 Contigs 277,514 bp
Longest Contig 876,240 bp
Scaffold Count 64
N50 Scaffolds 277,514 bp
Longest Scaffold 876,240 bp
Genome Size 6,204,691 bp
Protein Count 5,623
Coding Density 88.36%
GC Percentage 58.81%
Ambiguous Bases 175
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM102087v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03650329
Country USA
Date 2015-6-5
Genbank Assembly Accession GCA_001020875.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 41.2500 N 96.0000 W
Molecule Count 0
Protein Count 5,621
Refseq Category na
Seq Rel Date 2015/06/05
Spanned Gaps 0
Species Taxid 294
SSU Count 4
Submitter University of Michigan, Ann Arbor
Taxid 294
Total Gap Length 0
Translation Table 11
tRNA Count (total) 60
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LCZE00000000.1