Bifidobacterium bifidum
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium bifidum
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium bifidum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium bifidum
NCBI Strain Identifiers LMG 11582
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001025135.1)
Genome Characteristics
CheckM Completeness 99.45%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 6
N50 Contigs 495,432 bp
Longest Contig 968,696 bp
Scaffold Count 6
N50 Scaffolds 495,432 bp
Longest Scaffold 968,696 bp
Genome Size 2,222,504 bp
Protein Count 1,820
Coding Density 85.74%
GC Percentage 62.76%
Ambiguous Bases N/A
GTDB representative GCA_001025135.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Bbif07v4
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03097403
Country None
Date 2015-6-5
Genbank Assembly Accession GCA_001020275.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Adult stool sample
Latitude Longitude None
Molecule Count N/A
CDS Count 1,829
Refseq Category na
Seq Rel Date 2015/06/05
Spanned Gaps 0
Species Taxid 1681
SSU Count 2
Submitter University of Parma
Taxid 1681
Total Gap Length 0
Translation Table 11
tRNA Count (total) 53
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSDY00000000.1