Bifidobacterium bifidum
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium bifidum
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium bifidum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium bifidum
NCBI Strain Identifiers IPLA 20017
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001025135.1)
Genome Characteristics
CheckM Completeness 99.54%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 22
N50 Contigs 180,731 bp
Longest Contig 303,129 bp
Scaffold Count 22
N50 Scaffolds 180,731 bp
Longest Scaffold 303,129 bp
Genome Size 2,178,877 bp
Protein Count 1,793
Coding Density 85.58%
GC Percentage 62.60%
Ambiguous Bases 8
GTDB representative GCA_001025135.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Bbif05v4
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03097402
Country None
Date 2015-6-5
Genbank Assembly Accession GCA_001020265.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Infant intestine
Latitude Longitude None
Molecule Count N/A
CDS Count 1,799
Refseq Category na
Seq Rel Date 2015/06/05
Spanned Gaps 0
Species Taxid 1681
SSU Count 2
Submitter University of Parma
Taxid 1681
Total Gap Length 0
Translation Table 11
tRNA Count (total) 54
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSDX00000000.1