Pseudomonas_E sp003033885
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E sp003033885
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas brassicacearum
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas brassicacearum
NCBI Strain Identifiers LZ-4
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003033885.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.21%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 111
N50 Contigs 153,775 bp
Longest Contig 431,325 bp
Scaffold Count 111
N50 Scaffolds 153,775 bp
Longest Scaffold 431,325 bp
Genome Size 6,217,867 bp
Protein Count 5,599
Coding Density 88.20%
GC Percentage 60.08%
Ambiguous Bases N/A
GTDB representative GCA_003033885.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM101781v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02800876
Country China: Lanzhou
Date 2015-6-2
Genbank Assembly Accession GCA_001017815.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source wastewater from Lanzhou reach of the Yellow River
Latitude Longitude None
Molecule Count N/A
CDS Count 5,616
Refseq Category na
Seq Rel Date 2015/06/02
Spanned Gaps 0
Species Taxid 930166
SSU Count 1
Submitter Lanzhou University
Taxid 930166
Total Gap Length 0
Translation Table 11
tRNA Count (total) 50
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JNCR00000000.1