Frankia_A coriariae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Frankiaceae; g__Frankia_A; s__Frankia_A coriariae
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Frankiales; f__Frankiaceae; g__Frankia; s__Frankia coriariae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Frankiales; f__Frankiaceae; g__Frankia; s__Frankia coriariae
NCBI Strain Identifiers BMG5.1
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (7 genomes in species cluster)
Genome Characteristics
CheckM Completeness 95.31%
CheckM Contamination 0.55%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 288
N50 Contigs 41,204 bp
Longest Contig 202,722 bp
Scaffold Count 116
N50 Scaffolds 105,614 bp
Longest Scaffold 316,263 bp
Genome Size 5,795,263 bp
Protein Count 5,308
Coding Density 81.65%
GC Percentage 70.24%
Ambiguous Bases 2,648
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM101775v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03121018
Country Tunisia
Date 2015-6-2
Genbank Assembly Accession GCA_001017755.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Root nodules
Latitude Longitude None
Molecule Count N/A
CDS Count 4,945
Refseq Category na
Seq Rel Date 2015/06/02
Spanned Gaps 172
Species Taxid 1562887
SSU Count 1
Submitter University of Tunis El Manar, Faculty of Sciences of Tunis
Taxid 1562887
Total Gap Length 4302
Translation Table 11
tRNA Count (total) 45
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JWIO00000000.1